singleParticle.ini File Reference

Go to the source code of this file.

Functions
the number of triggers that contained	light (shots)[Processor] nShots/ID
set up the hll like	processing (removes offset and applies the mask) FrontPnCCD/FrameProcessorType = "hll"

Variables
single particle detection on a pnCCD	detector
the	processors
the raw	images
The rear detector image[Processor] RearPnCCDRaw	ID
definition of acutal light in the	chamber
pull the f11enrc gasdet value from the machine data and set a threshold	on
definitions of when a hit is	found
substract the median of the integral from the integral and	use
the substracted to find the	hit [Processor]
RearPnCCDArea	HistName = RearPnCCDRaw
RearPnCCDArea	XLow = 700
RearPnCCDArea	XUp = 850
RearPnCCDArea	YLow = 150
RearPnCCDArea	YUp = 300
RearPnCCDArea	Hide
identification for the later Processors by ANDing this	with
true Then one can use the IsHit Processor later by	only
display the real hit	rate
display the hit rate of good	shots
particle	size = 20
QAverage	Wavelength_A
QAverage	DetectorDistance_m
determine the particle size by the distance between the first minima of the q	average [Processor]
	monitoring
ScaledMinimaPositions	ValueName
Intensity	distribution
	statistics
H5Dump Processor	Name
program control and	setup
disable the pre analyzers as their functionality is ported to the new framework[PreAnalyzer]	useCommercialCCDAnalyzer
only extract	pnCCD
only extract other camera data and machine data from the stream[Converter]	Used = pixeldetector
what output level should be written into the log file[Log]	MaxLoggingLevel
definition of the Front detector[PixelDetectors] FrontPnCCD	Detector = 0
set up the common mode correction FrontPnCCD HLLProcessing	CommonModeCalculationType = "none"
set up how to create the	noise
set up how to create the offset map FrontPnCCD CorrectionMaps	NoisyPixelThreshold = -1
FrontPnCCD CorrectionMaps	LowerNoisyPixelThreshold
FrontPnCCD CorrectionMaps FixedOnlineCreatorCommonMode	StartInstantly
FrontPnCCD CorrectionMaps	OutputOffsetNoiseFilename = "darkcal_0.cal"
the cut part of the ccd FrontPnCCD CorrectionMaps Mask	MaskElementType
example mask	types
FrontPnCCD CorrectionMaps Mask	CenterX = 500
FrontPnCCD CorrectionMaps Mask	CenterY = 500
FrontPnCCD CorrectionMaps Mask	Radius = 100
FrontPnCCD CorrectionMaps Mask	LowerLeftX = 10
FrontPnCCD CorrectionMaps Mask	LowerLeftY = 10
FrontPnCCD CorrectionMaps Mask	UpperRightX = 90
FrontPnCCD CorrectionMaps Mask	UpperRightY = 90
FrontPnCCD CorrectionMaps Mask	SemiAxisX = 50
FrontPnCCD CorrectionMaps Mask	SemiAxisY = 10
FrontPnCCD CorrectionMaps Mask	PointA_X = 10
FrontPnCCD CorrectionMaps Mask	PointA_Y = 10
FrontPnCCD CorrectionMaps Mask	PointB_X = 20
FrontPnCCD CorrectionMaps Mask	PointB_Y = 10
FrontPnCCD CorrectionMaps Mask	PointC_X = 10
FrontPnCCD CorrectionMaps Mask	PointC_Y = 20

Function Documentation

the number of triggers that contained light

(

shots

)

Examples:

singleParticle.ini.

set up the hll like processing

(

removes offset and applies the

mask

)

= "hll"

Examples:

Fluorescence-pnCCD.ini, and singleParticle.ini.

Variable Documentation

determine the particle size by the distance between the first minima of the q average[Processor]

Examples:

CsPadCrystal.ini, Fluorescence-pnCCD.ini, SACLA-offline.ini, SACLA-online.ini, and singleParticle.ini.

Definition at line 294 of file singleParticle.ini.

Referenced by cass::pp331::calculateGainMap(), and cass::pixeldetector::MovingMaps::loadSettings().

RearPnCCD CorrectionMaps Mask CenterX = 500

Examples:

singleParticle.ini.

Definition at line 744 of file singleParticle.ini.

RearPnCCD CorrectionMaps Mask CenterY = 500

Examples:

singleParticle.ini.

Definition at line 745 of file singleParticle.ini.

definition of acutal light in the chamber

Examples:

singleParticle.ini.

Definition at line 29 of file singleParticle.ini.

RearPnCCD HLLProcessing CommonModeCalculationType = "none"

Examples:

singleParticle.ini.

Definition at line 716 of file singleParticle.ini.

an integral over a certain region of the rear detector

Examples:

singleParticle.ini.

Definition at line 2 of file singleParticle.ini.

definition of the rear detector [PixelDetectors] RearPnCCD Detector = 0

Examples:

singleParticle.ini.

Definition at line 711 of file singleParticle.ini.

QAverage DetectorDistance_m

Initial value:

= detectordistance_m
QAverage/PixelSize_m = 75e-6
QAverage/XNbrBins = 1000
QAverage/XLow = 0
QAverage/XUp = 0.02
QAverage/XTitle = "Q [1/A]"
QAverage/Hide = false

Examples:

singleParticle.ini.

Definition at line 284 of file singleParticle.ini.

Intensity distribution

Examples:

hdf5-input.ini, and singleParticle.ini.

Definition at line 420 of file singleParticle.ini.

Referenced by cass::CummulativeStatisticsNoOutlier< Type >::setDistribution().

definitions of when a hit is found

Examples:

singleParticle.ini.

Definition at line 58 of file singleParticle.ini.

RearPnCCDArea Hide

Initial value:

= true
Mask/ID = 302
Mask/BinaryFile = "/reg/neh/home1/lutz/analysis/amob3313/mask.bin"
Mask/SizeX = 1024
Mask/SizeY = 1024
Mask/Hide = true
MaskedRear/ID = 1
MaskedRear/HistOne = RearPnCCDRaw
MaskedRear/HistTwo = Mask
MaskedRear/Operation = *
MaskedRear/Hide = true
RearPnCCDAreaIntegral/ID = 82

Examples:

singleParticle.ini.

Definition at line 68 of file singleParticle.ini.

RearPnCCDAreaIntegral HistName = RearPnCCDRaw

Examples:

singleParticle.ini.

Definition at line 63 of file singleParticle.ini.

Things done when there is a hit

Examples:

singleParticle.ini.

Definition at line 62 of file singleParticle.ini.

output [Processor] H5Dump ID

Initial value:

= 105
RearPnCCDRaw/Detector = RearPnCCD
RearPnCCDRaw/Hide = false

Examples:

singleParticle.ini.

Definition at line 14 of file singleParticle.ini.

the raw images

Examples:

CsPadCrystal.ini, Darkcal.ini, Fluorescence-pnCCD.ini, SACLA-offline.ini, SACLA-online.ini, and singleParticle.ini.

Definition at line 12 of file singleParticle.ini.

RearPnCCD CorrectionMaps Mask LowerLeftX = 10

Examples:

Fluorescence-pnCCD.ini, and singleParticle.ini.

Definition at line 748 of file singleParticle.ini.

RearPnCCD CorrectionMaps Mask LowerLeftY = 10

Examples:

Fluorescence-pnCCD.ini, and singleParticle.ini.

Definition at line 749 of file singleParticle.ini.

RearPnCCD CorrectionMaps LowerNoisyPixelThreshold

Initial value:

= 0
FrontPnCCD/CorrectionMaps/MapCreatorType = "onlinecommonmode"

Examples:

singleParticle.ini.

Definition at line 723 of file singleParticle.ini.

RearPnCCD CorrectionMaps Mask MaskElementType

Initial value:

= "square"
FrontPnCCD/CorrectionMaps/Mask/1/LowerLeftX = 488
FrontPnCCD/CorrectionMaps/Mask/1/LowerLeftY = 480
FrontPnCCD/CorrectionMaps/Mask/1/UpperRightX = 533
FrontPnCCD/CorrectionMaps/Mask/1/UpperRightY = 541

Examples:

singleParticle.ini.

Definition at line 737 of file singleParticle.ini.

what output level should be written into the log file [Log] MaxLoggingLevel

Initial value:

= "INFO"
Directory = "logfiledir"
Filename = "logfilename.log"

Examples:

singleParticle.ini.

Definition at line 701 of file singleParticle.ini.

monitoring

Examples:

singleParticle.ini.

Definition at line 353 of file singleParticle.ini.

H5Dump ProcessorSummary Name

Initial value:

= photon_energy_eV
H5Dump/Processor/1/GroupName = /LCLS/

Examples:

singleParticle.ini.

Definition at line 577 of file singleParticle.ini.

set up how to create the noise

Examples:

singleParticle.ini.

Definition at line 721 of file singleParticle.ini.

RearPnCCD CorrectionMaps NoisyPixelThreshold = -1

Examples:

singleParticle.ini.

Definition at line 722 of file singleParticle.ini.

true Then one can use the IsHit Processor later on

Examples:

singleParticle.ini.

Definition at line 30 of file singleParticle.ini.

true Then one can use the IsHit Processor later by only

Examples:

singleParticle.ini.

Definition at line 112 of file singleParticle.ini.

RearPnCCD CorrectionMaps OutputOffsetNoiseFilename = "darkcal_0.cal"

Examples:

singleParticle.ini.

Definition at line 733 of file singleParticle.ini.

only extract pnCCD

Examples:

Fluorescence-pnCCD.ini, and singleParticle.ini.

Definition at line 663 of file singleParticle.ini.

RearPnCCD CorrectionMaps Mask PointA_X = 10

Examples:

singleParticle.ini.

Definition at line 758 of file singleParticle.ini.

RearPnCCD CorrectionMaps Mask PointA_Y = 10

Examples:

singleParticle.ini.

Definition at line 759 of file singleParticle.ini.

RearPnCCD CorrectionMaps Mask PointB_X = 20

Examples:

singleParticle.ini.

Definition at line 760 of file singleParticle.ini.

RearPnCCD CorrectionMaps Mask PointB_Y = 10

Examples:

singleParticle.ini.

Definition at line 761 of file singleParticle.ini.

RearPnCCD CorrectionMaps Mask PointC_X = 10

Examples:

singleParticle.ini.

Definition at line 762 of file singleParticle.ini.

FrontPnCCD CorrectionMaps Mask PointC_Y = 20

Examples:

singleParticle.ini.

Definition at line 763 of file singleParticle.ini.

the processors

Examples:

singleParticle.ini.

Definition at line 4 of file singleParticle.ini.

RearPnCCD CorrectionMaps Mask Radius = 100

Examples:

CsPadCrystal.ini, SACLA-offline.ini, SACLA-online.ini, and singleParticle.ini.

Definition at line 746 of file singleParticle.ini.

single particle hit rate

Initial value:

= 61
UnSaturatedHitRate/HistName = IsUnSaturatedHit
UnSaturatedHitRate/NbrOfAverages = 50
UnSaturatedHitRate/Hide = true
UnSaturatedHitRateHistory/ID = 64
UnSaturatedHitRateHistory/HistName = UnSaturatedHitRate
UnSaturatedHitRateHistory/Size = 2400
UnSaturatedHitRateHistory/Hide = false

Examples:

singleParticle.ini.

Definition at line 135 of file singleParticle.ini.

Referenced by LED::setFlashRate().

RearPnCCD CorrectionMaps Mask SemiAxisX = 50

Examples:

singleParticle.ini.

Definition at line 755 of file singleParticle.ini.

RearPnCCD CorrectionMaps Mask SemiAxisY = 10

Examples:

singleParticle.ini.

Definition at line 756 of file singleParticle.ini.

program control and setup

Examples:

singleParticle.ini.

Definition at line 658 of file singleParticle.ini.

display the hit rate of good shots

Examples:

SACLA-offline.ini, and singleParticle.ini.

Definition at line 135 of file singleParticle.ini.

the mask elements RearPnCCD CorrectionMaps Mask size = 20

Examples:

singleParticle.ini.

Definition at line 274 of file singleParticle.ini.

RearPnCCD CorrectionMaps FixedOnlineCreatorCommonMode StartInstantly

Initial value:

= true
FrontPnCCD/CorrectionMaps/FixedOnlineCreatorCommonMode/NbrFrames = 200
FrontPnCCD/CorrectionMaps/FixedOnlineCreatorCommonMode/WriteMaps = true
FrontPnCCD/CorrectionMaps/FixedOnlineCreatorCommonMode/Multiplier = 4
FrontPnCCD/CorrectionMaps/FixedOnlineCreatorCommonMode/CommonModeCalculationType = "none"
FrontPnCCD/CorrectionMaps/InputOffsetNoiseFiletype = "cass"
FrontPnCCD/CorrectionMaps/InputOffsetNoiseFilename = "darkcal_0.lnk"
FrontPnCCD/CorrectionMaps/OutputOffsetNoiseFiletype = "cass"

Examples:

singleParticle.ini.

Definition at line 725 of file singleParticle.ini.

statistics

Examples:

singleParticle.ini.

Definition at line 455 of file singleParticle.ini.

example mask types

Examples:

singleParticle.ini.

Definition at line 743 of file singleParticle.ini.

RearPnCCD CorrectionMaps Mask UpperRightX = 90

Examples:

Fluorescence-pnCCD.ini, and singleParticle.ini.

Definition at line 750 of file singleParticle.ini.

RearPnCCD CorrectionMaps Mask UpperRightY = 90

Examples:

Fluorescence-pnCCD.ini, and singleParticle.ini.

Definition at line 751 of file singleParticle.ini.

chaning here which condition to use

Initial value:

= 1
IsHit/HistOne = DefaultTrueHist
IsHit/HistTwo = RearPnCCDHitfinder
IsHit/Operation = "AND"
IsHit/Hide = true
IsNotHit/ID = 4
IsNotHit/HistName = IsHit
IsNotHit/Hide = true

Examples:

CsPadCrystal.ini, hdf5-input.ini, SACLA-online.ini, and singleParticle.ini.

Definition at line 60 of file singleParticle.ini.

Referenced by cass::pp208::getBoxStatistics(), and cass::pp208::isNotHighest().

disable the pre analyzers as their functionality is ported to the new framework [PreAnalyzer] useCommercialCCDAnalyzer

Initial value:

= false
usepnCCDAnalyzer = false

Examples:

singleParticle.ini.

Definition at line 660 of file singleParticle.ini.

only extract other camera data and machine data from the stream [Converter] Used = pixeldetector

Examples:

singleParticle.ini.

Definition at line 665 of file singleParticle.ini.

ScaledMinimaPositions ValueName

Initial value:

= QAverageMaxValue
ScaledMinimaPositions/Value = 10000
ScaledMinimaPositions/Operation = "*"
ScaledMinimaPositions/ValuePos = "second"
ScaledMinimaPositions/ConditionName = IsUnSaturatedHit
ScaledMinimaPositions/Hide = true

Examples:

singleParticle.ini.

Definition at line 377 of file singleParticle.ini.

QAverage Wavelength_A

Initial value:

= 10.333
QAverage/DetectorDistance_m = 72e-2
QAverage/Wavelength_A = photon_wavelength_A

Examples:

singleParticle.ini.

Definition at line 281 of file singleParticle.ini.

identification for the later Processors by ANDing this with

Examples:

singleParticle.ini.

Definition at line 112 of file singleParticle.ini.

RearPnCCDArea XLow = 700

Examples:

singleParticle.ini.

Definition at line 64 of file singleParticle.ini.

RearPnCCDArea XUp = 850

Examples:

singleParticle.ini.

Definition at line 65 of file singleParticle.ini.

RearPnCCDArea YLow = 150

Examples:

singleParticle.ini.

Definition at line 66 of file singleParticle.ini.

RearPnCCDArea YUp = 300

Examples:

singleParticle.ini.

Definition at line 67 of file singleParticle.ini.